Add support for modeling both B-cell and T-cell immune responses in the within-host simulator, including separate inputs for B-cell and T-cell epitopes and corresponding fitness summaries in the output.
Update the R run_wavess() wrapper, input checks, vignettes, and Python config files to reflect the new immune modeling options.
wavess 1.1.0
Allow for variable recombination rate across the sequence in the run_wavess() R function and the run_wavess.py Python script. This means you can now model recombination hotspots, two genes without the intervening sequence, and reassortment.
