Get epitope frequencies

Get epitope frequencies

Usage

get_epitope_frequencies(epitope_positions)

Arguments

epitope_positions

numeric vector of amino acid positions of identified epitopes (e.g. the env features from the LANL HIV database)

Value

tibble with the following columns:

• aa_position: amino acid position

• n_features: number of features at that position

• epitope_probability: estimated probability of an epitope at that position

Examples

get_epitope_frequencies(env_features$Position - 1) # subtract 1 to index at 0
#> # A tibble: 480 × 3
#>    aa_position n_features epitope_probability
#>          <dbl>      <dbl>               <dbl>
#>  1          30          1            0.000331
#>  2          31          0            0       
#>  3          32          0            0       
#>  4          33          0            0       
#>  5          34          0            0       
#>  6          35          0            0       
#>  7          36          0            0       
#>  8          37          0            0       
#>  9          38          0            0       
#> 10          39          0            0       
#> # ℹ 470 more rows